pyscal reference#
- pyscal Reference
- pyscal.core module
System
System.box
System.atoms
System.__init__()
System.add_atoms()
System.atoms
System.box
System.calculate_angularcriteria()
System.calculate_centrosymmetry()
System.calculate_chiparams()
System.calculate_cna()
System.calculate_disorder()
System.calculate_energy()
System.calculate_entropy()
System.calculate_pmsro()
System.calculate_q()
System.calculate_rdf()
System.calculate_solidneighbors()
System.calculate_sro()
System.calculate_vorovector()
System.cluster_atoms()
System.embed_in_cubic_box()
System.extract_cubic_box()
System.find_diamond_neighbors()
System.find_largestcluster()
System.find_neighbors()
System.find_solids()
System.get_atom()
System.get_concentration()
System.get_custom()
System.get_distance()
System.get_qvals()
System.identify_diamond()
System.iter_atoms()
System.read_inputfile()
System.remap_atoms()
System.repeat()
System.reset_neighbors()
System.set_atom()
System.set_atom_cutoff()
System.show()
System.to_ase()
System.to_file()
test()
Atom
Atom.__init__()
Atom.allaq
Atom.allq
Atom.angular
Atom.avg_angular
Atom.avg_disorder
Atom.avg_energy
Atom.avg_entropy
Atom.avg_sij
Atom.avg_volume
Atom.bonds
Atom.centrosymmetry
Atom.chiparams
Atom.cluster
Atom.cna
Atom.common
Atom.condition
Atom.coordination
Atom.custom
Atom.cutoff
Atom.disorder
Atom.edge_lengths
Atom.energy
Atom.entropy
Atom.face_perimeters
Atom.face_vertices
Atom.get_q()
Atom.get_qlm()
Atom.ghost
Atom.id
Atom.largest_cluster
Atom.loc
Atom.local_angles
Atom.mask
Atom.neighbor_distance
Atom.neighbor_vector
Atom.neighbor_weights
Atom.neighbors
Atom.next_neighbor_distances
Atom.next_neighbors
Atom.pos
Atom.set_q()
Atom.sij
Atom.solid
Atom.sro
Atom.structure
Atom.surface
Atom.type
Atom.vertex_numbers
Atom.vertex_positions
Atom.vertex_vectors
Atom.volume
Atom.vorovector
- pyscal.crystal_structures module
- pyscal.trajectory module
- pyscal.traj_process module
- pyscal.misc module
- pyscal.core module